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    Home » Recipes » Snacks

    Published: Sep 12, 2019 · Last Updated: Sep 12, 2019 by Kyndra Holley

    Cream Cheese Stuffed Everything Bagel Bites

    This post may contain affiliate links

    Jump to Recipe·Print Recipe· 4.9 from 23 reviews
    Cream Cheese Stuffed Bagel Bites - Keto, Low Carb, Gluten Free
    Cream Cheese Stuffed Bagel Bites - Keto, Low Carb, Gluten Free
    Cream Cheese Stuffed Bagel Bites - Keto, Low Carb, Gluten Free
    Cream Cheese Stuffed Bagel Bites - Keto, Low Carb, Gluten Free
    Cream Cheese Stuffed Bagel Bites - Keto, Low Carb, Gluten Free

    These Cream Cheese Stuffed Everything Bagel Bites are warm, chewy and so delicious that you would never guess they are low carb and gluten free.

    A white plate piled high with low carb cream cheese stuffed bagel bites - coated generously with everything bagel seasoning.
    Table of Contents show
    Ingredients in Keto Bagel Bites
    Ingredient Notes
    How to make Keto Bagel Bites
    Step By Step Instructions
    Frequently Asked Questions
    How to make dessert bagel bites
    Other Recipes You Might Enjoy
    Cream Cheese Stuffed Everything Bagel Bites

    Ingredients in Keto Bagel Bites

    recipe ingredients for cream cheese stuffed everything bagel bites - cheese, almond flour, eggs, baking powder, seasonings

    Ingredient Notes

    • Almond Flour - for this recipe, I recommend using a blanched almond flour or a super fine almond flour. Additionally, it makes a much better dough if you run the almond flour through a sifter
    • Mozzarella Cheese - for the overall success of this recipe, it is important to use a pre-shredded, low moisture, part skin mozzarella cheese
    • Cream Cheese - I recommend using a full fat cream cheese. It is lower in carbs and give the dough a better texture.
    • Bagel Seasoning - any store-bought bagel seasoning will work for this recipe, but I recommend making your own. Try my Everything Bagel Seasoning Blend Recipe

    How to make Keto Bagel Bites

    Mixing bowl with shredded mozzarella cheese and cream cheese in it

    Step By Step Instructions

    1. Combine the shredded mozzarella cheese and cream cheese in a microwave safe mixing bowl.

    Mixing bowl with melted and combined mozzarella cheese and cream cheese

    2. Microwave on high for 1 minute and 30 seconds. Stir to combine. If necessary, continue microwaving in 20 second increments until all ingredients are melted and well combined.

    Fathead dough in a mixing bowl - almond flour, mozzarella cheese, cream cheese, garlic powder, onion powder, eggs and baking powder

    3. Combine the almond flour, baking powder, garlic powder, onion powder, and Italian seasoning. Add to the bowl with the melted cheese, along with 2 of the eggs and mix until all ingredients are well incorporated.

    fathead dough ready to be formed into keto bagel bites

    4. Continue mixing until all ingredients are well combined and it has started to form a thick fathead dough mixture.

    fathead dough, formed into keto bagel bites, ready to be baked

    5. Form the dough into 24 evenly sized balls and place them on a parchment lined baking sheet.

    rounds of fathead dough with chunks of cream cheese on top of them, ready to be formed into stuffed bagel bites

    6. Flatten each dough ball and place some cream cheese in the center. Form the dough around the cream cheese, back into the shape of a ball. Alternately, you can press your thumb into the dough ball to create a pocket for the cream cheese and then seal the dough around it.

    stuffed bagel bites, coated in everything bagel seasoning on a parchment lined baking sheet

    7. Whisk the remaining egg to make an egg wash. Dip each dough ball in the egg wash and then coat it in the bagel seasoning. Bake at 425°F for 10 to 12 minutes or until golden brown.

    an overshot shot of a white plate, full of low carb cream cheese stuffed bagel bites

    Frequently Asked Questions

    What is fathead dough?

    Fathead dough is a low carb dough made out of cheese, cream cheese, eggs, seasonings, and a gluten free flour. In this recipe, I’m using almond flour because it’s a great option for keto baking. If you switch up this recipe with a different low carb flour, just know that your results may vary. Information on substituting almond flour with coconut flour for a nut free keto bagel recipe.

    Can I just make this dough into regular bagels instead?

    Yes, absolutely. In fact, I have several other keto bagel recipes on my site and may already have what you are looking for - Keto Everything Bagels, Cinnamon Sugar (free) Bagels, Everything Bagel Dogs, and even Keto Pizza Bagels.

    Do I have to add the seasonings to the dough?

    No, you do not. They just add some extra flavor. Feel free to mix and match any seasonings you prefer, or omit them altogether.

    What should I serve these keto bagel bites with?

    I like to serve these Cream Cheese Stuffed Everything Bagel Bites, with Three Cheese Garlic Marinara and Keto Ranch Dressing.  I also really like to serve them with one of my many keto soup recipes and just dip away!

    A white plate piled high with low carb cream cheese stuffed bagel bites - coated generously with everything bagel seasoning.

    How to make dessert bagel bites

    For a quick keto dessert recipe, double the batch and make keto Cinnamon Sugar Bagel Bites, inspired by my Keto Cinnamon Sugar (Free) Bagels. The instructions and method are very similar, but instead of using onion powder, garlic powder and Italian seasoning in the dough, you replace it with equal parts cinnamon and the keto sweetener of your choice. Instead of sprinkling the bagel bites with Everything But the Bagel, roll them in a 1:1 mixture of granular erythritol and cinnamon.

    A white plate piled high with low carb cream cheese stuffed bagel bites - coated generously with everything bagel seasoning.

    Other Recipes You Might Enjoy

    • Keto Chocolate Peanut Butter Pops
    • Keto Baked Feta Pasta with Tomatoes
    • Gluten Free Bagel Breakfast Sandwiches
    • Hasselback Pizza Chicken
    • Roasted Brussels Sprouts with Creamy Cider Dijon Dressing
    • Shrimp Cakes with Remoulade Sauce
    • Spinach and Artichoke Dip Chicken Soup

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    Cream Cheese Stuffed Bagel Bites - Keto, Low Carb, Gluten Free

    Cream Cheese Stuffed Everything Bagel Bites


    5 Stars 4 Stars 3 Stars 2 Stars 1 Star

    4.9 from 23 reviews

    • Author: Kyndra Holley
    • Total Time: 27 minutes
    • Yield: 24 bagel bites 1x
    • Diet: Gluten Free
    Print Recipe
    Pin Recipe

    Description

    A deliciously comforting keto treat - Cream Cheese Stuffed Everything Bagel Bites. Perfect to serve with marinara sauce, ranch, or even a piping hot bowl of soup. 


    Ingredients

    Scale
    • 2 cups blanched almond flour (I use this brand)
    • 1 tablespoon baking powder
    • 1 teaspoon onion powder
    • 1 teaspoon garlic powder
    • 1 teaspoon Italian seasoning (I use this brand of spices)
    • 3 large eggs, divided
    • 3 cups low fat, part skim shredded mozzarella
    • 5 tablespoons cream cheese
    • ¼ cup Everything Bagel Seasoning (get the recipe here)
    • 6 ounces cream cheese, cold


    Instructions

    1. Preheat the oven to 425°F. Line a rimmed baking sheet with parchment paper or a silicone baking mat.
    2. In a medium mixing bowl, combine the almond flour, baking powder, garlic powder, onion powder, and dried Italian seasoning. Mix until well combined. I like to put the mixture through a flour sifter to ensure that all the baking powder gets mixed in with the rest of the ingredients.
    3. Crack one of the eggs into a small bowl and fork whisk. This will be the egg wash for the top of the bagels. The other two eggs will go in the dough.
    4. In a large microwave safe mixing bowl, combine the mozzarella cheese and cream cheese. Microwave for 1 minute and 30 seconds. Remove from microwave and stir to combine. Return to microwave for 1 additional minute. Mix until well combined.
    5. To the mixing bowl, add the remaining 2 eggs and the almond flour mixture. Mix until all ingredients are well incorporated. If the dough gets too stringy and unworkable, simply put it back in the microwave for 30 seconds to soften and continue mixing.
    6. Roll the dough into 24 even sized balls. Cut the block of cream cheese into 24 equal sized squares.
    7. Take each dough ball and gently press your thumb into the center of it to create a pocket. Put a piece of cream cheese inside the pocket and shape the dough around it to seal the cream cheese into the center.
    8. Pour the bagel seasoning into a shallow bowl.
    9. Brush egg wash over each bagel bite and then roll it in the bagel seasoning.
    10. Place the coated bagel bites in a single layer across the baking sheet. Bake for 10 to 12 minutes or until the dough is golden brown on the outside and cooked through.

    Notes

    • If you have trouble forming the dough, or if it becomes sticky, simply wet your hands with a little bit of water. 
    • If you would like to make these ahead of time and freeze them to cook later, they make an excellent bake-from-frozen treat. 

     

    net carbs per serving (4 bagel bites): 6g

    • Prep Time: 15 minutes
    • Cook Time: 12 minutes
    • Category: Appetizers
    • Method: Baking
    • Cuisine: German

    Nutrition

    • Serving Size: 4 bagel bites
    • Calories: 526
    • Fat: 37g
    • Carbohydrates: 10g
    • Fiber: 4g
    • Protein: 29.2g

    Did you make this recipe?

    Tag @kyndraholley on Instagram and hashtag it #peaceloveandlowcarb

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    Reader Interactions

    Comments

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    1. Leah says

      March 10, 2021 at 11:01 am

      These were fun an relatively easy to make. I did not sift or use blanched almond flour (just the kind from TJ's) and they turned out fine. A little too salty and garlicky for me, so next time I'd probably make my own bagel seasoning and limit the seasoning in the dough as well. Thanks for the recipe!

      Reply
    2. Rachel says

      March 05, 2021 at 9:32 am

      So good! I accidentally use the full block of cream cheese instead of the 6 ounces so I will cut back on that next time. I wonder if these freeze well because it would be great to pull some out when needed!

      Reply
    3. Eileen says

      February 24, 2021 at 1:49 pm

      I've made these at least 5-6 times. Genuine family favorite! I often will make them with no seasoning on the outside, or with just a light sprinkle of garlic salt or maybe sesame seeds. My teenage kids love them--it's even been on the Birthday Breakfast list more than once this past year!

      I stick the block of cream cheese in the freezer while I make the dough so that it will be easier to chunk up. Dough is very forgiving and easy to work with. Love it!

      Reply
    4. Gael says

      February 22, 2021 at 3:34 pm

      These were so easy and very tasty. Will definitely be on my list of favorites!

      Reply
    5. Renee says

      July 26, 2020 at 7:38 am

      I wish I could upload a pic. These are delicious. I halfed the recipe. Only change I would make is to sprinkle, not roll, the everything bagel seasoning on. Even my non keto family loved them.

      Reply
    6. Leslie says

      May 15, 2020 at 6:05 am

      So yummy! Easy to make since i keep fathead dough in the freezer. Eveything bagel flavor tastes just like eating a carb laden bagel! I also did cinnamon. Delish in the afternoon with tea.

      Reply
    7. Debbie says

      November 09, 2019 at 9:44 am

      These look amazing! Can't wait to make them . Just wondering how to store them. Can I freeze them unbaked or would I bake them all then rehreat? What's the best wsy to store them? Thank you.

      Reply
    8. Sue says

      November 01, 2019 at 12:52 pm

      Kundra,
      These Bagel Bites are absolutely amazing. The flavor was outstanding I'm wondering if I can make them up ahead of time and cook them the next day.
      Mine didn't stay around like yours did though they kind of fell is there any trick to keeping them nice and round 🙂

      Reply
    9. Jane says

      September 20, 2019 at 4:26 am

      I’m so excited to try this since the ones at Starbucks were my jam before keto. I hope you can do a cook-a-long on ig soon with this recipe so I can learn how you get them to ball up well. I love when you do those. Thanks!

      Reply
    10. Carolyn says

      September 17, 2019 at 12:15 pm

      So I almost never comment on friend's blogs or even read their posts, and I know you know why. But OH MY GOD! These are effing brilliant and I just shared them on my Facebook page!

      Reply
      • Kyndra Holley says

        September 17, 2019 at 11:05 pm

        Thanks Carolyn!! I really appreciate it!

        Reply
      • Karen Moberly says

        August 24, 2021 at 8:17 pm

        I made these bagel bites they’re amazing I put too much bagel seasoning though they were very salty but other than that they were great how do I store them?

        Reply
    Newer Comments »

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    About Kyndra


    Kyndra
    Hey there! Welcome to my site! I am Kyndra Holley - International Best Selling Cookbook Author, and the face behind this blog. I am an avid lover of all things low carb, keto and gluten free. I focus on real, whole food ingredients that you can find at your local grocer. Read more about Peace Love and Low Carb...

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