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    Home » Recipes » Breakfast Recipes

    Published: May 10, 2025 · Last Updated: May 10, 2025 by Kyndra Holley

    Ham and Cheese Egg Muffins

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    Ham and Cheese Egg muffins, garnished with fresh herbs, cooling on a wire rack.
    Ham and Cheese Egg muffins, garnished with fresh herbs, cooling on a wire rack.
    Ham and Cheese Egg muffins, garnished with fresh herbs, cooling on a wire rack.
    Ham and Cheese Egg muffins, garnished with fresh herbs, cooling on a wire rack.

    These Ham and Cheese Egg Muffins are a savory, low carb, high protein breakfast or snack that can be easily prepped ahead of time. The cottage cheese adds a creamy texture and a bit of tang, while the combination of cheddar and gruyere gives a delicious depth of flavor.

    Table of Contents show
    How to Make High Protein Egg Muffins
    Step by Step Instructions
    More Egg Muffin Recipes
    Recipe Tips and Variations
    Frequently Asked Questions
    More High Protein Breakfast Recipes
    Ham and Cheese Egg Muffins

    How to Make High Protein Egg Muffins

     Egg muffins, garnished with fresh herbs, cooling on a wire rack.

    Step by Step Instructions

    STEP 1: Preheat the oven to 350°F. Grease a 12 well muffin tin or use a silicone muffin mold. 

    STEP 2: In a blender, combine the eggs, cottage cheese, the gruyere cheese and half of the cheddar cheese, salt, garlic powder, and black pepper. Pulse until smooth. 

    STEP 3: Divide the ham evenly among the 12 wells of the muffin tin. Pour the egg mixture into the wells of the muffin tin, filling three quarters of the way full. Sprinkle the remaining cheddar cheese over top. 

    STEP 4: Bake for 15 to 20 minutes, or until the eggs are set in the center and the tops are lightly golden brown. 

    More Egg Muffin Recipes

    • Copycat Starbucks Bacon and Gruyere Egg Bites
    • Prosciutto and Veggie Egg Muffins
    • Buffalo Chicken Egg Muffins
    • Taco Egg Muffins
    Ham and Cheese Egg muffins, garnished with fresh herbs, cooling on a wire rack.

    Recipe Tips and Variations

    • Batch Cooking: These ham and cheese egg muffins freeze very well. I like to make a double batch and portion them out into 2 to 3 servings and freeze them for future meal prep. Try these Chicken Pot Pie Egg Muffins.
    • Storage: Store leftovers in the refrigerator for up to 4 days. Alternatively, they can be frozen for up to 2 months.
    • Make it Vegetarian: Omit the ham and substitute fresh veggies like spinach, bell peppers, mushrooms, or zucchini. Just make sure to sauté moisture rich vegetables before adding to the egg mixture to avoid watery egg muffins. (I save a lot of money by getting my produce here)
    • Change up the protein: In place of the ham, you can also use sausage, bacon, or even turkey bacon. Better yet, do a mix of multiple meats.
    • Swap the Cheeses: In place of the cheddar and gruyere, you could also use mozzarella, Swiss, pepper jack, parmesan, pecorino Romano, or any of your favorite cheeses. The cottage cheese adds a creamy texture and packs the protein.
    • Add Fresh Herbs: Add herbs like parsley, thyme, oregano, or fresh chops inside the egg mixture or on top as a garnish.
    Ham and Cheese Egg muffins, garnished with fresh herbs, cooling on a wire rack.

    Frequently Asked Questions

    What is the best way to reheat egg muffins?

    I like to heat them for a minute or 2 in the microwave and then finish them in the air fryer so they get nice and crispy on top. Alternatively you can reheat them entirely in the microwave, or in a pan on the stovetop.

    Can you freeze egg muffins?

    These muffins freeze really well. I like to wrap each serving individually for quick breakfasts throughout the week.

    Can these be made ahead of time?

    Yes, these are perfect to make ahead of time and use for meal prep throughout the week.

    Egg muffins, garnished with fresh herbs, cooling on a wire rack.

    More High Protein Breakfast Recipes

    • 2 baked egg clouds, topped with chives, on a white ceramic plate with a fork.
      Sour Cream and Chive Egg Clouds
    • Mixed Berry Cheesecake Smoothie - low carb
    • Gluten Free Pumpkin Spice granola in a decorative glass jar, shaped like a pumpikin
      Caramel Pumpkin Spice Granola - Keto, Dairy Free
    • Overhead Shot of a cooling rack lined with meat and veggie egg muffins
      Prosciutto and Veggie Egg Muffins - low carb, whole30

    REVIEW AND FOLLOW: Have you tried this recipe? If so, please leave a comment and ⭐️ rating below. If you make our recipes and share them, be sure to use our hashtag #peaceloveandlowcarb on social! We love seeing what you are making. FOLLOW us on FACEBOOK | INSTAGRAM | PINTEREST for more delicious recipes.


    Check out my new cookbook - SIMPLY DELICIOUS. It has over 100 quick and easy recipes and tons of valuable resources. It contains sheet pan recipes, 30 minute meals, air fryer recipes, slow cooker recipes, one pot meals, bowls and boards, and more.

    GRAB A COPY HERE
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    Ham and Cheese Egg muffins, garnished with fresh herbs, cooling on a wire rack.

    Ham and Cheese Egg Muffins


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    • Author: Kyndra Holley
    • Total Time: 30 minutes
    • Yield: 6 Servings 1x
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    Description

    These Ham and Cheese Egg Muffins are a savory, low carb, high protein breakfast or snack that can be easily prepped ahead of time. The cottage cheese adds a creamy texture and a bit of tang, while the combination of cheddar and gruyere gives a delicious depth of flavor.


    Ingredients

    Units Scale
    • 8 large eggs
    • 1 cup cottage cheese
    • ½ teaspoon garlic powder
    • ½ teaspoon sea salt
    • ¼ teaspoon black pepper
    • ½ cup shredded cheddar cheese
    • ½ cup shredded gruyere cheese
    • 1 ¼ cup diced ham

    Instructions

    1. Preheat the oven to 350°F. Grease a 12 well muffin tin or use a silicone muffin mold. 
    2. In a blender, combine the eggs, cottage cheese, the gruyere cheese and half of the cheddar cheese, salt, garlic powder, and black pepper. Pulse until smooth. 
    3. Divide the ham evenly among the 12 wells of the muffin tin. Pour the egg mixture into the wells of the muffin tin, filling three quarters of the way full. Sprinkle the remaining cheddar cheese over top. 
    4. Bake for 15 to 20 minutes, or until the eggs are set in the center and the tops are lightly golden brown. 

    Notes

    • Batch Cooking: These muffins freeze very well. I like to make a double batch and portion them out into 2 to 3 servings and freeze them for future meal prep.
    • Storage: Store leftovers in the refrigerator for up to 4 days. Alternatively, they can be frozen for up to 2 months. 
    • Make it Vegetarian: Omit the ham and substitute fresh veggies like spinach, bell peppers, mushrooms, or zucchini. Just make sure to sauté moisture rich vegetables before adding to the egg mixture to avoid watery egg muffins. 
    • Change up the protein: In place of the ham, you can also use sausage, bacon, or even turkey bacon. Better yet, do a mix of multiple meats. 
    • Prep Time: 10 minutes
    • Cook Time: 20 minutes
    • Category: Breakfast Recipes
    • Method: Baking

    Nutrition

    • Serving Size: 2 Egg Muffins
    • Calories: 280
    • Fat: 12g
    • Carbohydrates: 3g
    • Fiber: .5g
    • Protein: 17g

    Did you make this recipe?

    Tag @kyndraholley on Instagram and hashtag it #peaceloveandlowcarb

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    About Kyndra


    Kyndra
    Hey there! Welcome to my site! I am Kyndra Holley - International Best Selling Cookbook Author, and the face behind this blog. I am an avid lover of all things low carb, keto and gluten free. I focus on real, whole food ingredients that you can find at your local grocer. Read more about Peace Love and Low Carb...

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